bdgenomics.mango.genotypes.VariantsPerSampleDistribution¶

class bdgenomics.mango.genotypes.VariantsPerSampleDistribution(ss, genotypeDataset, sample=1.0)[source]¶

VariantsPerSampleDistribution class. VariantsPerSampleDistribution computes a distribution of the count of variants per sample.

__init__(ss, genotypeDataset, sample=1.0)[source]¶

Initializes a VariantsPerSampleDistributionn class. Computes the coverage distribution of a CoverageDataset. This dataset can have data for multiple samples.

Args:

param genotypeDataset:
param ss:	global SparkSession.
	bdgenomics.adam.ds.GenotypeDataset
param sample:	Fraction to sample GenotypeDataset. Should be between 0 and 1

Methods

`__init__`(ss, genotypeDataset[, sample])	Initializes a VariantsPerSampleDistributionn class.
`plotDistributions`([normalize, cumulative, …])	Plots final distribution values and returns the plotted distribution as a Counter object.

Attributes

`pre_sampled`
`rdd`
`sample`
`seed`
`ss`