bdgenomics.mango.genotypes.HetHomRatioDistribution¶

class bdgenomics.mango.genotypes.HetHomRatioDistribution(ss, genotypeDataset, sample=1.0)[source]¶

HetHomRatioDistribution class. HetHomRatioDistribution computes a distribution of (Heterozygote/Homozygote) ratios from a genotypeDataset.

__init__(ss, genotypeDataset, sample=1.0)[source]¶

Initializes HetHomRatioDistribution class. Retrieves the call rate and missing rate for each sample in a genotypeDataset

Args:

param genotypeDataset:
param ss:	global SparkSession.
	bdgenomics.adam.ds.GenotypeDataset
param sample:	Fraction to sample GenotypeDataset. Should be between 0 and 1

Methods

`__init__`(ss, genotypeDataset[, sample])	Initializes HetHomRatioDistribution class.
`plot`([testMode])	Plots final distribution values and returns the plotted distribution as a list