bdgenomics.mango.genotypes.GenotypeCallRatesDistribution

class bdgenomics.mango.genotypes.GenotypeCallRatesDistribution(ss, genotypeDataset, sample=1.0)

GenotypeCallRatesDistribution class. GenotypeCallRatesDistribution computes a distribution of per-sample genotype call rates from a genotypeDataset.

__init__(ss, genotypeDataset, sample=1.0)

Initializes a GenotypeCallRatesDistribution class. Retrieves counts of called and missing genotypes from a genotypeDataset.

Args:

param ss:SparkContext param genotypeDataset:  bdgenomics.adam.ds.GenotypeDataset param sample:Fraction to sample GenotypeDataset. Should be between 0 and 1

Methods

__init__(ss, genotypeDataset[, sample])	Initializes a GenotypeCallRatesDistribution class.
plot([testMode])	Plots final distribution values and returns the plotted distribution as a list