bdgenomics.mango.alignments.IndelDistribution¶

class bdgenomics.mango.alignments.IndelDistribution(ss, alignmentDataset, sample=1.0, bin_size=10000000)[source]¶

IndelDistribution class. IndelDistribution calculates indel distributions on an AlignmentDataset.

__init__(ss, alignmentDataset, sample=1.0, bin_size=10000000)[source]¶

Initializes a IndelDistribution class. Computes the insertiona and deletion distribution of alignmentDataset.

Args:

param SparkSession:
	the global SparkSession
param alignmentDataset:
	A bdgenomics.adam.dataset.AlignmentDataset object
param bin_size:	Division size per bin

Methods

`__init__`(ss, alignmentDataset[, sample, …])	Initializes a IndelDistribution class.
`plot`([testMode, plotType])	Plots final distribution values and returns the plotted distribution as a counter object.