bdgenomics.mango.alignments.FragmentDistribution¶

class bdgenomics.mango.alignments.FragmentDistribution(ss, alignmentDataset, sample=1.0)[source]¶

FragmentDistribution class. Plotting functionality for visualizing fragment distributions of multi-sample cohorts.

__init__(ss, alignmentDataset, sample=1.0)[source]¶

Initializes a FragmentDistribution class. Computes the fragment distribution of a AlignmentDataset. This Dataset can have data for multiple samples.

Args:

param alignmentDataset:
param ss:	global SparkSession.
	bdgenomics.adam.Dataset.AlignmentDataset
param sample:	Fraction to sample AlignmentDataset. Should be between 0 and 1

Methods

`__init__`(ss, alignmentDataset[, sample])	Initializes a FragmentDistribution class.
`plotDistributions`([normalize, cumulative, …])	Plots final distribution values and returns the plotted distribution as a Counter object.

Attributes