bdgenomics.mango.coverage.CoverageDistribution¶

class bdgenomics.mango.coverage.CoverageDistribution(ss, coverageDataset, sample=1.0, bin_size=10, pre_sampled=False)[source]¶

CoverageDistribution class. Plotting functionality for visualizing coverage distributions of multi-sample cohorts.

__init__(ss, coverageDataset, sample=1.0, bin_size=10, pre_sampled=False)[source]¶

Initializes a CoverageDistribution class. Computes the coverage distribution of a CoverageRDD. This RDD can have data for multiple samples.

Args:

param coverageRDD:
param ss:	global SparkSession.
	bdgenomics.adam.ds.CoverageDataset
param sample:	Fraction to sample CoverageRDD. Should be between 0 and 1

Methods

`__init__`(ss, coverageDataset[, sample, …])	Initializes a CoverageDistribution class.
`plotDistributions`([normalize, cumulative, …])	Plots final distribution values and returns the plotted distribution as a Counter object.

Attributes