bdgenomics.mango.variants.VariantSummary¶

class bdgenomics.mango.variants.VariantSummary(ac, dataset)[source]¶

VariantSummary class. VariantSummary provides scrollable visualization of variants based on genomic regions.

__init__(ac, dataset)[source]¶

Initializes a GenomicDataset viz class.

Args:

param ac:	bdgenomics.adamContext.ADAMContext
param dataset:	bdgenomics.adam.ds.VariantDataset

Methods

`__init__`(ac, dataset)	Initializes a GenomicDataset viz class.
`viewPileup`(contig, start, end[, reference, …])	Visualizes a portion of this VariantRDD in a scrollable pileup widget