bdgenomics.mango.pileup.sources.GA4GHAlignmentSource¶

class bdgenomics.mango.pileup.sources.GA4GHAlignmentSource(endpoint, readGroupId, callSetIds=None)[source]¶

Initializes GA4GHAlignmentSource.

Args:

param str:	url endpoint
param str:	read group id

__init__(endpoint, readGroupId, callSetIds=None)¶

Initializes GA4GHSource.

Args:

param str:	url endpoint
param str:	read group id
param str:	optional call set ID for variants

Methods

__init__(endpoint, readGroupId[, callSetIds]) Initializes GA4GHSource.

Attributes

`dict_`
`name`	name that pileup.js uses to identify sources