bdgenomics.mango.pileup.pileupViewer.PileupViewer¶
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class
bdgenomics.mango.pileup.pileupViewer.
PileupViewer
(**kwargs)[source]¶ Widget wrapper for pileup.js viewer in Jupyter notebooks.
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__init__
(**kwargs)¶ Public constructor
Methods
__init__
(**kwargs)Public constructor add_class
(className)Adds a class to the top level element of the widget. add_traits
(**traits)Dynamically add trait attributes to the Widget. class_own_trait_events
(name)Get a dict of all event handlers defined on this class, not a parent. class_own_traits
(**metadata)Get a dict of all the traitlets defined on this class, not a parent. class_trait_names
(**metadata)Get a list of all the names of this class’ traits. class_traits
(**metadata)Get a dict
of all the traits of this class.close
()Close method. close_all
()getSVG
()Sends request to javascript to convert to svg Needs to run separately from saveSVG because js cannot message to kernel until cell is completed. get_manager_state
([drop_defaults, widgets])Returns the full state for a widget manager for embedding get_state
([key, drop_defaults])Gets the widget state, or a piece of it. get_view_spec
()goto
(chrom, start, stop)Redirects widget view to new genomic locus. handle_comm_opened
(comm, msg)Static method, called when a widget is constructed. has_trait
(name)Returns True if the object has a trait with the specified name. hold_sync
()Hold syncing any state until the outermost context manager exits hold_trait_notifications
()Context manager for bundling trait change notifications and cross validation. notify_change
(change)Called when a property has changed. observe
(handler[, names, type])Setup a handler to be called when a trait changes. on_displayed
(callback[, remove])(Un)Register a widget displayed callback. on_msg
(callback[, remove])(Un)Register a custom msg receive callback. on_trait_change
([handler, name, remove])DEPRECATED: Setup a handler to be called when a trait changes. on_widget_constructed
(callback)Registers a callback to be called when a widget is constructed. open
()Open a comm to the frontend if one isn’t already open. remove_class
(className)Removes a class from the top level element of the widget. saveSVG
(filepath)Saves svg to filepath send
(content[, buffers])Sends a custom msg to the widget model in the front-end. send_state
([key])Sends the widget state, or a piece of it, to the front-end, if it exists. set_state
(sync_data)Called when a state is received from the front-end. set_trait
(name, value)Forcibly sets trait attribute, including read-only attributes. setup_instance
(**kwargs)This is called before self.__init__ is called. trait_defaults
(*names, **metadata)Return a trait’s default value or a dictionary of them trait_events
([name])Get a dict
of all the event handlers of this class.trait_has_value
(name)Returns True if the specified trait has a value. trait_metadata
(traitname, key[, default])Get metadata values for trait by key. trait_names
(**metadata)Get a list of all the names of this class’ traits. trait_values
(**metadata)A dict
of trait names and their values.traits
(**metadata)Get a dict
of all the traits of this class.unobserve
(handler[, names, type])Remove a trait change handler. unobserve_all
([name])Remove trait change handlers of any type for the specified name. zoomIn
()Zooms widget view in by a factor of 2. zoomOut
()Zooms widget view out by a factor of 2. Attributes
chrom
A trait for unicode strings. comm
A trait whose value must be an instance of a specified class. cross_validation_lock
A contextmanager for running a block with our cross validation lock set to True. id
keys
An instance of a Python list. layout
An instance trait which coerces a dict to an instance. log
A trait whose value must be an instance of a specified class. model_id
Gets the model id of this widget. msg
A trait for unicode strings. reference
A trait for unicode strings. start
An int trait. stop
An int trait. svg
A trait for unicode strings. tracks
An instance of a Python list. widget_types
widgets
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